Take PAL or Cebu Pacific flight to Tacloban City or Ormoc City. You can either take the Kuting Reef Shuttle or Commercial/Passenger Van from the Airport to Kuting Reef.
From Cebu:
Take the Passenger Ferry to Maasin or Hilongos or Bato, Leyte. You can either take the Kuting Reef Shuttle or Commercial/Passenger Van from the Port of Maasin or Hilongos or Bato, Leyte to Kuting Reef.